# BCCM/GENECORNER Plasmids Catalogue - Information file
#
# Version 2018.08.23.01
# Created August 23, 2018
# Derived from bccm_lmbp.i
# Author: Paolo Romano
# (c) CABRI 1999-2023

$BCCM_GENECORNER=$Resource:[
  description:
    |<p>
    |The BCCM/GeneCorner catalogue contains the (summarized) description of plasmids which were mainly constructed for
    |cloning and high-level expression of coding sequences (derived from a variety of organisms) in bacteria, yeasts, fungi and animal cells.
    |The complete datasheets, the circular maps as well as the nucleotide sequence file of these plasmids are available with the Collection.<p>
    |The catalogue is only a subset of the total plasmid collection and a snapshot at a given moment. 
    |Do not hesitate to contact us if you don't find a suitable plasmid.
  contact:
    |<address>
    |Lic. M. Vanhoucke<br>
    |BCCM/GeneCorner<br>
    |Department of Biomedical Molecular Biology, Ghent University<br>
    |Fiers-Schell-Van Montagu building<br>
    |Technologiepark 927<br>
    |B-9052 Gent Belgium<br>
    |Phone: +32-9-33 13 843<br>
    |</address>
  www:
    |<A HREF="http://www.irc.ugent.be/genecorner/">http://www.irc.ugent.be/genecorner/</A><br>
    |or<br>
    | <A HREF="http://bccm.belspo.be/about-us/bccm-genecorner">http://bccm.belspo.be/about-us/bccm-genecorner</A><br>
    |E-mail:<A HREF=mailto:bccm.genecorner@ugent.be> bccm.genecorner@ugent.be</A>
  email:
    |<A HREF=mailto:bccm.genecorner@ugent.be>bccm.genecorner@ugent.be</A>
  fields: { 
     Name: 
         |Name of the element<br>
         |<b>Input process</b>: name given by the depositor or as published<br>
         |<b>Required for</b>: Minimum Data SETo (MDS)<br>
         |<b>Indexed by</b>: Single words<br>
         |<b>Skipped characters</b>: /.-<br>
         |<b>Not indexed characters</b>: )(+%$"\&'?!|#@<<br>
     Collection_number:
         |Number of the element in the own collection under
         |which it is distributed<br>
         |<b>Input process</b>: Collection acronym followed by a number 
         |separated by space<br>
         |<b>Required for</b>: Minimum Data SETo (MDS)<br>
         |<b>Indexed by</b>: Unique element<br>
         |<b>Skipped characters</b>: ,;:.+*<br>
         |<b>Not indexed characters</b>: +$"\&'?!|#@<br>
     Type:
         |Element type<br>
         |<b>Input process</b>: Reference list: plasmid, phasmid, cosmid, 
         |shuttle vector, transposon, minitransposon, IS element<br>
         |<b>Required for</b>: Minimum Data SETo (MDS)<br>
         |<b>Indexed by</b>: Single words<br>
         |<b>Skipped characters</b>: Blank space<br>
         |<b>Not indexed characters</b>: )(+$"\'?!=|#@<br>
     Class:
         |Origin of the element<br>
         |<b>Input process</b>: Reference list: non-recombinant, recombinant<br>
         |<b>Required for</b>: Minimum Data SETo (MDS)<br>
         |<b>Indexed by</b>: Single words<br>
         |<b>Skipped characters</b>: Blank space<br>
         |<b>Not indexed characters</b>: )(+$"\'?!=|#@<br>
     Other_culture_collection_numbers:
         |Numbers of the element under which it is distributed by other 
         |culture<br>
         |collections, incl. non-CABRI numbers if possible 
         |(e.g. ATCC, NCTC, etc.)<br>
         |<b>Input process</b>: Automatically generated.
         |If the content of this field cannot automatically be generated at 
         |the main site it will be removed from the MDS for plasmids.<br>
         |<b>Required for</b>: Minimum Data SETo (MDS)<br>
         |<b>Indexed by</b>: Single words<br>
         |<b>Skipped characters</b>: Blank space<br>
         |<b>Not indexed characters</b>: )(+$"\'?!=|#@<br>
     Host_for_distribution:
         |Taxonomic designation and strain designation of the host organism in 
         |which the element is distributed<br>
         |<b>Input process</b>: e.g. Escherichia coli K12 MC1061. 
         |Reference list: CABRI in house agreed list<br>
         |<b>Required for</b>: Minimum Data SETo (MDS)<br>
         |<b>Indexed by</b>: Single words<br>
         |<b>Skipped characters</b>: Blank space<br>
         |<b>Not indexed characters</b>: )(+$"\'?!=|#@<br>
     Medium:
         |Name or collection number of the medium on which the host organism is 
         |preferably grown<br>
         |<b>Input process</b>: Free text which may be linked to a text file 
         |describing the recipe for the medium<br>
         |<b>Required for</b>: Minimum Data SETo (MDS)<br>
         |<b>Indexed by</b>: Single words<br>
         |<b>Skipped characters</b>: Blank space<br>
         |<b>Not indexed characters</b>: )(+$"\'?!|#@<br>
     Restricted_distribution:
         |Restrictions for distribution of the element (hazard group, "for
         |research purposes only", patent info, import/export regulations, 
         |etc.)<br>
         |<b>Input process</b>: Free text: "No" or the description of the 
         |appropriate restrictions<br>
         |<b>Required for</b>: Minimum Data SETo (MDS)<br>
         |<b>Indexed by</b>: Single words<br>
         |<b>Skipped characters</b>: Blank space<br>
         |<b>Not indexed characters</b>: )(+$"\'?!=|#@<br>
     Literature:
         |Original publication in which the element is described<br>
         |<b>Input process</b>: Free text<br> <u>New entry</u>: Author, Title 
         |Year';'Volume(iusse)':'beginning page#'-'ending page#<br>
         |The title of the journal is abbreviated following international 
         |standard rules; the abbreviations are without dot 
         |The title of the article is not mentioned<br>
         |<u>Existing entries</u>: Conversion by SRS following 
         |CABRI agreed standard<br>	
         |<b>Required for</b>: Minimum Data SETo (MDS)<br>
         |<b>Indexed by</b>: Single words<br>
         |<b>Skipped characters skipped</b>: Blank space<br>
         |<b>Not indexed characters</b>: )(+$"\'?!=|#@<br>
     History_of_deposit:
         |History of the element from author to depositor, in reverse order<br>
         |<b>Input process</b>: Free text. The name of the depositor must be 
         |entered obligatory; history when known<br>
         |<b>Required for</b>: Minimum Data SETo (MDS)<br>
         |<b>Indexed by</b>: Single words<br>
         |<b>Skipped characters</b>: Blank space<br>
         |<b>Not indexed characters</b>: )(+$"\'?!=|#@<br>
     Selectable_phenotype:
         |Feature encoded by the element enforcing its host strain 
         |to maintain the 
         |element in order to survive under 
         |appropriate cultivation conditions<br>
         |<b>Input process</b>: Reference list: CABRI in house agreed list<br>
         |<b>Required for</b>: Minimum Data SETo (MDS)<br>
         |<b>Indexed by</b>: Single words<br>
         |<b>Skipped characters</b>: Blank space<br>
         |<b>Not indexed characters</b>: )(+$"\'?!=|#@<br>
     Replicon:
         |Names of replicon elements<br>
         |<b>Input process</b>: Reference list: CABRI in house agreed list<br>
         |<b>Required for</b>: Minimum Data SETo (MDS)<br>
         |<b>Indexed by</b>: Single words<br>
         |<b>Skipped characters</b>: Blank space<br>
         |<b>Not indexed characters</b>: )(+$"\'?!=|#@<br>
     Host_range:
         |Hosts in which the element can be propagated and/or used and, when
         |applicable, the peculiar features that are necessary for making use of
         |the special characteristics of the element<br>
         |<b>Input process</b>: Free text based on the VECAP3 list in 
         |Vicente et al., World J. Microbiol. and Biotechnol. 
         |8 (1992), 519-526<br>
         |<b>Required for</b>: Minimum Data SETo (MDS)<br>
         |<b>Indexed by</b>: Single words<br>
         |<b>Skipped characters</b>: Blank space<br>
         |<b>Not indexed characters</b>: )(+$"\'?!=|#@<br>
     Cloned_gene:
         |Description of the genetic markers inserted<br> 
         |<b>Input process</b>: Free text<br> 
         |<b>Required for</b>: Full Data SETo (FDS)<br>
         |<b>Indexed by</b>: Single words<br>
         |<b>Skipped characters</b>: Blank space<br>
         |<b>Not indexed characters</b>: )(+$"'?!=|#@<br>
     Promoter:
         |Type of promoters present on the plasmid. 
         |The promoters controlling expression of the prokaryotic 
         |antibiotic resistance genes are not indicated<br>
         |<b>Input process</b>: Free text<br>
         |<b>Required for</b>: Full Data SETo (FDS)<br>
         |<b>Indexed by</b>: Single words<br>
         |<b>Skipped characters</b>: Blank space<br>
         |<b>Not indexed characters</b>: )(+$"'?!=|#@<br>
     Ribosome_binding_site:
         |Type of ribosome binding sites present on the plasmid. 
         |The ribosome binding sites upstream of the prokaryotic antibiotic 
         |resistance genes are not indicated<br>
         |<b>Input process</b>: Free text<br>
         |<b>Required for</b>: Full Data SETo (FDS)<br>
         |<b>Indexed by</b>: Single words<br>
         |<b>Skipped characters</b>: Blank space<br>
         |<b>Not indexed characters</b>: )(+$"'?!=|#@<br>
    Terminator:
         |Type of transcription terminators present on the plasmid<br>
         |<b>Input process</b>: Free text<br>
         |<b>Required for</b>: Full Data SETo (FDS)<br>
         |<b>Indexed by</b>: Single words<br>
         |<b>Skipped characters</b>: Blank space<br>
         |<b>Not indexed characters</b>: )(+$"'?!=|#@<br>
    Further_information:
         |Description of peculiar features and special functions which are 
         |not easily fitted into the other sections.<br>
         |Remarks on the history, other names and queries about the fine 
         |structure of the plasmid are also mentioned here<br>
         |<b>Input process</b>: Free text<br>
         |<b>Required for</b>: Full Data SETo (FDS)<br>
         |<b>Indexed by</b>: Single words<br>
         |<b>Skipped characters</b>: Blank space<br>
         |<b>Not indexed characters</b>: )(+$"'?!=|#@<br>
    Sequence_detail:
         |Part of the nucleotide sequence of the plasmid (e.g. a multiple 
         |cloning site, the result of a mutagenesis) is described in detail<br>
         |<b>Input process</b>: Free text<br>
         |<b>Required for</b>: Full Data SETo (FDS)<br>
         |<b>Indexed by</b>: Single words<br>
         |<b>Skipped characters</b>: Blank space<br>
         |<b>Not indexed characters</b>: )(+$"'?!=|#@<br>
     }
]