# BCCM/LMG Bacteria Catalogue - Information file
#
# Version 2004.05.27.01
# Last Updated May 27, 2004
# Author: Domenico Marra & Francesca Piersigilli & Paolo Romano
# (c) CABRI 1999-2023
$BCCM_LMG_RES=$Resource:[
description:
|<p>
|This is the BCCM™/LMG - Bacteria Collection
|<p>
|Over 25,000 strains, representing some 3,300 species, subspecies
| or pathovars, encompassing plant
| associated and phytopathogenic bacteria (pseudomonads, xanthomonads,
| erwiniae, agrobacteria, coryneforms, etc.), bacteria of medical or
| veterinary importance (Arcobacter, Campylobacter, Helicobacter,
| aeromonads, flavobacteria, bordetellae, enterococci, streptococci),
| marine bacteria (Vibrionaceae) and various groups of biotechnological
| interest (such as lactic acid and acetic acid bacteria, N2 fixers,
| bacilli, streptomycetes, etc.).<br>
| Most of the commonly used control, test and bioassay strains are
| incorporated.
contact:
|<ADDRESS>
|Ir. C. Vereecke, Dr. D. Janssens<br>
|BCCM™/LMG <br>
|Laboratorium voor Microbiologie, Universiteit Gent (RUG) <br>
|K.L. Ledeganckstraat 35 <br>
|B-9000 Gent <p>
|Phone: +32-9-264.51.08 <br>
|Fax: +32-9-264.53.46
|</ADDRESS><P>
www:
|<a href="http://bccm.belspo.be/about-us/bccm-lmg">
|http://bccm.belspo.be/about-us/bccm-lmg</A><br>
|Email:<a href=mailto:bccm.lmg@ugent.be>bccm.lmg@ugent.be</a>
email:
|<a href=mailto:bccm.lmg@ugent.be>bccm.lmg@ugent.be</a>
fields: {
Strain_number:
|Collections' own accession number of the strain:<br>
|<br>
|<b>Input process</b>: consists of collection acronym followed by a
|number or alphanumeric identifier separated with a blank.
|Make sure unique number is given to each strain<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<br>
|<b>Indexed by</b>: Unique string<br>
Name:
|Full scientific and most recent name of the strain:<br>
|- Genus name and species epithet<br>
|- Subspecies *<br>
|- Pathovar *<br>
|- Authors of the name<br>
|- Year of valid publication or validation<br>
|- Approbation of the name<br>
|<br>
|<b>Input process</b>:<br>
|Enter full scientific name as given by depositor
|and confirmed (or changed) by collection. Names of
|authors of the name, year of valid publication or
|validation and approbation are included after a
|comma<br>
|<br>
|<i>Values for approbation</i>:<br>
|AL = approved list, c.f.r. IJSB 1980<br>
|VL = validation list, in IJSB after 1980<br>
|VP = validly published, paper in IJSB after 1980<br>
|<br>
|<i>Reference list</i>:
|<a href="http://www.dsmz.de/bactnom/bactname.htm">DSMZ list of
|bacterial names</a><br>
|<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<br>
|<b>Indexed by</b>: Unique string<br>
Other_collection_numbers:
|Accession numbers of the strain in other collections<br>
|<br>
|<b>Input process</b>:<br>
|<i>New strain</i>: as given by depositor<br>
|<i>Existing strain</i>: if strain is sent to another collection,
|get and add accession number used in that collection. It can not be
|given if the strain is unique in the collection<br>
|Numbers from individual researchers are also allowed<br>
|<i>Collection acronyms</i>:<a href="/CABRI/home/
|guidelines/catalogue/CPocnbact.html">
|CABRI agreed list</a><br>
|Numbers are separated by semicolon<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<br>
|<b>Indexed by</b>: Unique string<br>
Restrictions:
|Value "no", or a text field describing the appropriate restrictions:
|hazard group, import/export regulations<br>
|<br>
|<b>Imput process</b>: Enter 'No' or actual restrictions,
|which may be linked to a file for conditions of delivery
|The text may contain codes which refer to text files explaining
|the restrictions in more detail<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<br>
|<b>Indexed by</b>: Unique string<br>
Organism_type:
|Contain value "Bacteria" or "Archaea"<br>
|<br>
|<b>Imput process</b>: Enter "Bacteria" or "Archaea"<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<br>
|<b>Index by</b>: Single words<br>
Infrasubspecific_names:
|Variety designation, epithet, authors and reference
|Does not apply to all strains<br>
|<br>
|<b>Imput process</b>:<br>
|Enter type and epithet of the variety as given
|by depositor and confirmed (or changed) by collection.
|Names of authors and reference are included.<br>
|This field excludes the pathovar name and the serovar name,
|which are both infrasubspecific names but are to be netered int
|the NAME field<br>
|<i>Format</i>: see <a href="/CABRI/home/guidelines
|/catalogue/CPisolbact.html">MINE format</a>
|(Stalpers et al., Systematic Applied Microbiol 1990; 13:92-103)
|<a href='http://www.urbanfischer.de/journals/sam/mic_biol.htm'>
|http://www.urbanfischer.de/journals/sam/mic_biol.htm</a><br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<br>
|<b>Indexed by</b>:Single words<br>
Status:
|Nomenclatural status of the strain (like "type", "neotype", etc.).
|Does not apply to all strains<br>
|<br>
|<b>Imput process</b>: Enter information on type and scientific name
|of organism, for which material from which strain was isolated is
|type material<br>
|<i>Format</i>: see <a href="/CABRI/home/guidelines
|/catalogue/CPinfrabact.html">MINE format</a>
|(Stalpers et al., Systematic Applied Microbiol 1990;13:92-103)<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<br>
|<b>Indexed by</b>:Single words<br>
Other_names:
|Names used for the strain in the past (not synonyms) that may still
|be in use. Same format as Name field, does not apply to
|all strains<br>
|<br>
|<b>Imput process</b>: Enter previous names used for the strain if
|they are no synonyms of the current name.
|Same format as Name field<br>
|<b>Required for</b>: Recommended Data SETo (RDS)<br>
|<br>
|<b>Indexed by</b>: Unique string<br>
History:
|History of the element from depositor to isolator<br>
|- Name of depositor<br>
|- Institute of depositor<br>
|- Name of isolator<br>
|- Institute of isolator<br>
|- Names and institutes in between<br>
|<br>
|<b>Imput process</b>: Enter information as given by depositor<br>
|<i>Format</i>: see <a href='/CABRI/home/guidelines
|/catalogue/CPhistorybact.html'>MINE format</a> (Stalpers et al.,
|Systematic Applied Microbiol 1990;13:92-103)<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<br>
|<b>Indexed by</b>: Single words<br>
Conditions_for_growth:
|Culture medium, atmospheric and light conditions,
|temperature conditions<br>
|<br>
|<b>Imput process</b>:<br>
|Each collection has to provide its own list of
|culture media and recipes, medium provided for strain is linked to
|medium in this file. (<a href='http://www.dsmz.de/media/media.htm'>
|http://www.dsmz.de/media/media.htm</a>)<br>
|Atmospheric and light conditions should only be given if they are
|special.<br>
|Additional remarks on the cultivation like 'freshly prepared medium
|is necessary' or 'extended incubation time...' if necessary'<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<br>
|<b>Indexed by</b>: Single words<br>
Form_of_supply:
|Form in which the strain will be sent to the custom<br>
|<br>
|<b>Imput process</b>: Values: ‘Active', ‘Dried', 'Dried ice'<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<br>
|<b>Indexed by</b>: Single words<br>
Serovar:
|Serovar name and author.
|Required for some medically important species,
|does not apply to all strains<br>
|<br>
|<b>Imput process</b>: <br>
|<i>Format</i>: see
|<a href='/CABRI/home
|/guidelines/catalogue/CPserobact.html'>MINE format</a> (Stalpers
|et al., Systematic Applied Microbiol 1990;13:92-103)<br>
|<b>Required for</b>: Recommended Data SETo (RDS)<br>
|<br>
|<b>Indexed by</b>: Single words<br>
Isolated_from:
|Name of substrate or host from which the strain was isolated<br>
|<br>
|<b>Imput process</b>: Enter information as given by depositor or as
|retrieved from public information sources<br>
|<i>Format</i>: see <a href='/CABRI/home/guidelines
|/catalogue/CPisolbact.html'>MINE format</a>
|(Stalpers et al., Systematic Applied Microbiol 1990;13:92-103)<br>
|<b>Required for</b>: Recommended Data SETo (RDS)<br>
|<br>
|<b>Indexed by</b>: Single words<br>
Geographic_origin:
|Name of country where strain originated from, followed by details
|on location<br>
|<br>
|<b>Imput process</b>: Enter information as given by depositor or as
|retrieved from public information sources<br>
|<i>Format</i>: see <a href='/CABRI/home/guidelines
|/catalogue/CPgeographicbact.html'>MINE format</a>
|(Stalpers et al., Systematic Applied Microbiol 1990;13:92-103)<br>
|<i>CABRI agreed list for country</i>: name based on country code
|file retrieved from: <a href='ftp://ftp.ripe.net
|/iso3166-countrycodes'>ftp://ftp.ripe.net/iso3166-countrycodes
|</a>.<br>
|Updated by the RIPE Network Co-ordination Centre, in co-ordination
|with the ISO 3166 Maintenance Agency at DIN Berlin.
|Exception for UK, USA, USSR, Netherlands, North Korea<br>
|<b>Required for</b>: Recommended Data SETo (RDS)<br>
|<br>
|<b>Indexed by</b>: Single words<br>
Mutant:
|Type and parent of mutant if strain is a mutant strain.
|Applies only to a small number of strains<br>
|<br>
|<b>Input process</b>: Free text: enter information as given by
|depositor or as retrieved from public information sources<br>
|<b>Required for</b>: Recommended Data SETo (RDS)<br>
|<br>
|<b>Indexed by</b>: Single words<br>
Genotype:
|Names of chromosomal markers of the strain. Especially recommended
|for strains of species for which many genetically modified strains
|exist. Does not apply to all strains<br>
|<br>
|<b>Input process</b>:<br>
|<i>Format</i>: see <a href='/CABRI/home/guidelines
|/catalogue/CPserobact.html'>MINE format</a> (Stalpers et al.,
|Systematic Applied Microbiol 1990;13:92-103)<br>
|<b>Required for</b>: Recommended Data SETo (RDS)<br>
|<br>
|<b>Indexed by</b>: Single words<br>
}
]