# CRBIP_CIP Bacteria Catalogue
#
# Version 2009.07.23.01
# Last Updated July 23, 2009
# Author: Paolo Romano
# (c) CABRI 1999-2009

$CRBIP_CIP_BACT_DB=$Library:[CRBIP_CIP_BACT group:$CABRI_BACT_LIBS
 res:$CRBIP_CIP_BACT_RES
 comment:'Collection Institut Pasteur - Collection of bacteria (Paris, France)'
 defaultEntryView:$Entries_View
 defaultView:$CABRI_Bacteria_View
# defaultSortFld:'namesort'
 format:$CRBIP_CIP_BACT_FORMAT maxNameLen:60
 files:{$LibFile:crbip_cip_bact}
 links:{ $Link:[$CRBIP_CIP_BACT_DB to:$BCCM_LMG_DB
           fromField:$DF_CABRI_Strain_number toField:$DF_CABRI_Other_collection_numbers]
         $Link:[$CRBIP_CIP_BACT_DB to:$CABI_BACT_DB
           fromField:$DF_CABRI_Strain_number toField:$DF_CABRI_Other_collection_numbers]
         $Link:[$CRBIP_CIP_BACT_DB to:$CBS_BACT_DB
           fromField:$DF_CABRI_Strain_number toField:$DF_CABRI_Other_collection_numbers]
         $Link:[$CRBIP_CIP_BACT_DB to:$CRBIP_COSIB_BACT_DB
           fromField:$DF_CABRI_Strain_number toField:$DF_CABRI_Other_collection_numbers]
         $Link:[$CRBIP_CIP_BACT_DB to:$CRBIP_CIP_BACT_MEDIA_DB
           fromField:$DF_CABRI_Conditions_for_growth toField:$DF_CABRI_Medium]
      }
 ]

$CRBIP_CIP_BACT_FILE=$FileType:[text typeName:'dat' maxline:10000 fieldTokens:fields]
$CRBIP_CIP_BACT_SYNTAX=$Syntax:[file:'SRSSITE:crbip_cip_bact.is' ignore:'\t']

$CRBIP_CIP_BACT_FORMAT=$LibFormat:[fileType:$CRBIP_CIP_BACT_FILE syntax:$CRBIP_CIP_BACT_SYNTAX
 printFormat:table3 tableFormat:left
 fields:{
  $Field:[$DF_CABRI_Strain_number code:strain_no index:id
          indexToken:strain_no tableToken:'t_fields|strain_no'
#            sortable:y
            ]
  $Field:[$DF_CABRI_Other_collection_numbers code:other_nos index:str
          indexToken:'other_nos' tableToken:'t_fields|other_nos']
  $Field:[$DF_CABRI_Restrictions code:restrictions index:str
          indexToken:'strX|restrictions' tableToken:'t_fields|restrictions']
  $Field:[$DF_CABRI_Organism_type code:org_type index:str
          indexToken:'strX|org_type' tableToken:'t_fields|org_type']
  $Field:[$DF_CABRI_Name code:name index:str
          indexToken:'name' tableToken:'t_fields|name'
#          sortable:y sortTokens:{namesort}
            ]
  $Field:[$DF_CABRI_Infrasubspecific_names code:inf_name index:str
          indexToken:'strX|inf_name' tableToken:'t_fields|inf_name']
  $Field:[$DF_CABRI_Status code:status index:str
          indexToken:'strX|status' tableToken:'t_fields|status']
  $Field:[$DF_CABRI_History code:history index:str
          indexToken:'strX|history' tableToken:'t_fields|history']
  $Field:[$DF_CABRI_Conditions_for_growth code:cond index:str
          indexToken:'strX|cond' tableToken:'t_fields|cond']
  $Field:[$DF_CABRI_Form_of_supply code:supply index:str
          indexToken:'strX|supply' tableToken:'t_fields|supply']
  $Field:[$DF_CABRI_Isolated_from code:isol_from index:str
          indexToken:'strX|isol_from' tableToken:'t_fields|isol_from']
  $Field:[$DF_CABRI_Geographic_origin code:geo_origin index:str
          indexToken:'strX|geo_origin' tableToken:'t_fields|geo_origin']
  $Field:[$DF_CABRI_Literature code:lit index:str
          indexToken:lit tableToken:'t_fields|lit']
  $Field:[$DF_CABRI_Serovar code:serovar index:str
          indexToken:'strX|serovar' tableToken:'t_fields|serovar']

  $Field:[$DF_CABRI_IDE]
  $Field:[$DF_CABRI_NAM]
  $Field:[$DF_CABRI_ALL]
  $Field:[$DF_CABRI_Information code:information index:show
          indexToken:'strX|name' token:'strX|name' tableToken:'t_fields|name']
    }
 ]

$CRBIP_CIP_BACT_RL_DB=$Library:[CRBIP_CIP_BACT_RL group:$CABRI_BACT_HIDDEN_LIBS
 type:hidden 
 defaultView:$CABRI_Bacteria_View
 format:$CRBIP_CIP_BACT_RL_FORMAT maxNameLen:60
 files:{$LibFile:crbip_cip_bact}
 links:{ $Link:[$CRBIP_CIP_BACT_RL_DB to:$BCCM_LMG_RL_DB
           fromField:$DF_CABRI_Other_collection_numbers
           toField:$DF_CABRI_Strain_number]
         $Link:[$CRBIP_CIP_BACT_RL_DB to:$CABI_BACT_RL_DB
           fromField:$DF_CABRI_Other_collection_numbers
           toField:$DF_CABRI_Strain_number]
         $Link:[$CRBIP_CIP_BACT_RL_DB to:$CBS_BACT_RL_DB
           fromField:$DF_CABRI_Other_collection_numbers
           toField:$DF_CABRI_Strain_number]
         $Link:[$CRBIP_CIP_BACT_RL_DB to:$CRBIP_CIP_BACT_DB
           fromField:$DF_CABRI_Strain_number toField:$DF_CABRI_Strain_number]
       }
 ]

$CRBIP_CIP_BACT_RL_FORMAT=$LibFormat:[fileType:$CRBIP_CIP_BACT_FILE syntax:$CRBIP_CIP_BACT_SYNTAX
   printFormat:table3 tableFormat:left
   fields:{ $Field:[$DF_CABRI_Strain_number code:strain_no index:id
                    indexToken:strain_no tableToken:'t_fields|strain_no']  
            $Field:[$DF_CABRI_Other_collection_numbers code:other_nos index:str
                    indexToken:'other_nos' tableToken:'t_fields|other_nos']
    }
 ]

$CRBIP_CIP_BACT_EL_DB=$Library:[CRBIP_CIP_BACT_EL group:$CABRI_BACT_HIDDEN_LIBS
 type:hidden 
 defaultView:$CABRI_Bacteria_View
 format:$CRBIP_CIP_BACT_EL_FORMAT maxNameLen:60
 files:{$LibFile:crbip_cip_bact}
 links:{ $Link:[$CRBIP_CIP_BACT_EL_DB to:$BCCM_LMG_EL_DB
           fromField:$DF_CABRI_Other_collection_numbers
           toField:$DF_CABRI_Other_collection_numbers]
         $Link:[$CRBIP_CIP_BACT_EL_DB to:$CABI_BACT_EL_DB
           fromField:$DF_CABRI_Other_collection_numbers
           toField:$DF_CABRI_Other_collection_numbers]
         $Link:[$CRBIP_CIP_BACT_EL_DB to:$CBS_BACT_EL_DB
           fromField:$DF_CABRI_Other_collection_numbers
           toField:$DF_CABRI_Other_collection_numbers]
         $Link:[$CRBIP_CIP_BACT_EL_DB to:$CRBIP_CIP_BACT_DB
           fromField:$DF_CABRI_Strain_number toField:$DF_CABRI_Strain_number]
       }
 ]

$CRBIP_CIP_BACT_EL_FORMAT=$LibFormat:[fileType:$CRBIP_CIP_BACT_FILE syntax:$CRBIP_CIP_BACT_SYNTAX
   printFormat:table3 tableFormat:left
   fields:{ $Field:[$DF_CABRI_Strain_number code:strain_no index:id
                    indexToken:strain_no tableToken:'t_fields|strain_no']  
            $Field:[$DF_CABRI_Other_collection_numbers code:other_nos index:str
                    indexToken:'other_nos' tableToken:'t_fields|other_nos']
    }
   ]