# CRBIP_CIP Bacteria Catalogue - Information file
# Version 2020.12.04.01
# Last Updated December 4, 2020
# Author: Paolo Romano
# (c) CABRI 1999-2023
$CRBIP_CIP_BACT_RES=$Resource:[
description:
|The Collection of the Institut Pasteur (CIP).
contact:
|<ADDRESS>
|Collection de l'Institut Pasteur<br>
|Institut Pasteur<br>
|BP 52<br>
|28 rue du Docteur Roux<br>
|F-75724 Paris Cedex 15<br>
|FRANCE</p>
|<p>
|Phone: + 33 (0)1 45 68 87 75 / + 33 (0)1 44 38 91 95<br>
|Fax : + 33 (0)1 45 68 81 07<br>
|</p></ADDRESS>
www:
|<A HREF="https://www.pasteur.fr/fr/sante-publique/biobanques-collections/collection-institut-pasteur-cip">https://www.pasteur.fr/fr/sante-publique/biobanques-collections/collection-institut-pasteur-cip</A>
email:
|<a href="mailto:cip@pasteur.fr">cip@pasteur.fr</a>
fields: {
Strain_number:
|Collections' own accession number of the strain:<br>
|<br>
|<b>Input process</b>: consists of collection acronym followed by a
|number or alphanumeric identifier separated with a blank.
|Make sure unique number is given to each strain<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>: Unique string<br>
|<b>Example of search</b>:<br>
|<i>Query</i>: IMI 039045<br>
|<i>Retrieved result</i>: Name Streptomyces lavendulae<br>
Name:
|full scientific and most recent name of the strain:<br>
|<br>
|- Genus name and species epithet<br>
|- Subspecies *<br>
|- Pathovar *<br>
|- Authors of the name<br>
|- Year of valid publication or validation<br>
|- Approbation of the name<br>
|<br>
|<b>Input process</b>: Enter full scientific name as given by depositor |and confirmed (or changed) by collection. Names of
|authors of the name, year of valid publication or
|validation and approbation are included after a
|comma<br>
|<br>
|<i>Values for approbation</i>:<br>
|<br>
|AL = approved list, c.f.r. IJSB 1980<br>
|VL = validation list, in IJSB after 1980<br>
|VP = validly published, paper in IJSB after 1980<br>
|<br>
|<br>
|<b>Reference list</b>:
|<a href="http://www.dsmz.de/bactnom/bactname.htm"> DSMZ list of
|bacterial names</a> <br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>: Unique string<br>
Other_collection_numbers:
|Accession numbers of the strain in other collections<br>
|<br>
|<b>Input process</b>:<br>
|<i>New strain</i>: as given by depositor<br>
|<br>
|<i>Existing strain</i>: if strain is sent to another collection,
|get and add accession number used in that collection. It can not be
|given if the strain is unique in the collection<br>
|<br>
|Numbers from individual researchers are also allowed<br>
|<br>
|<i>Collection acronyms</i>:
|<a href="/guidelines/catalogue/CPocnbact.html">CABRI agreed list</a>
|<br><br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>: Unique string<br>
|<b>Example of search</b>:<br>
|<i>Query</i>: ATCC 10745<br>
|<i>Retrieved result</i>: Strain_number IMI 061202<br>
Restrictions:
|Value "no", or a text field describing the appropriate restrictions:
|hazard group, import/export regulations<br>
|<br>
|<b>Imput process</b>: Enter 'No' or actual restrictions,
|which may be linked to a file for conditions of delivery
|The text may contain codes which refer to text files explaining
|the restrictions in more detail<br>
|<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>: Single words<br>
|<b>Example of search</b>:<br>
|<i>Query</i>: Hazard<br>
|<i>Retrieved result</i>: Strain_number IMI 349009<br>
Organism_type:
|Contain value "Bacteria" or "Archaea"<br>
|<br>
|<b>Imput process</b>: Enter "Bacteria" or "Archaea"<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Index by</b>: Single words<br>
Infrasubspecific_names:
|Variety designation, epithet, authors and reference
|Does not apply to all strains<br>
|<br>
|<b>Imput process</b>: Enter type and epithet of the variety as given
|by depositor and confirmed (or changed) by collection.
|Names of authors and reference are included.<br>
|This field excludes the pathovar name and the serovar name,
|which are both infrasubspecific names but are to be netered int
|the NAME field<br>
|<br>
|<i>Format</i>: see <a href="CPisolbact.html">MINE format</a>
|(Stalpers et al., Systematic Applied Microbiol 1990; 13:92-103
|<a href='http://www.urbanfischer.de/journals/sam/mic_biol.htm'>
|http://www.urbanfischer.de/journals/sam/mic_biol.htm</a>)<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>:Single words<br>
Status:
|Nomenclatural status of the strain (like "type", "neotype", etc.)<br>
|Does not apply to all strains<br>
|<br>
|<b>Imput process</b>: Enter information on type and scientific name
|of organism, for which material from which strain was isolated is
|type material<br>
|<br>
|<i>Format</i>: see
|<a href="/guidelines/catalogue/CPinfrabact.html">MINE format</a>
|(Stalpers et al., Systematic Applied Microbiol 1990;13:92-103)<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>:Single words<br>
Other_names:
|Names used for the strain in the past (not synonyms) that may still
|be in use. Same format as Name field. Does not apply to
|all strains<br>
|<br>
|<b>Imput process</b>: Enter previous names used for the strain if
|they are no synonyms of the current name.
|Same format as Name field<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
History:
|History of the element from depositor to isolator<br>
|- Name of depositor<br>
|- Institute of depositor<br>
|- Name of isolator<br>
|- Institute of isolator<br>
|- Names and institutes in between<br>
|<br>
|<b>Imput process</b>: Enter information as given by depositor<br>
|<br>
|<i>Format</i>: see
|<a href='/guidelines/catalogue/CPhistorybact.html'>MINE format</a>
|(Stalpers et al., Systematic Applied Microbiol 1990;13:92-103)<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>:Single words<br>
Conditions_for_growth:
|Culture medium<br>
|Atmospheric an light conditions<br>
|Temperature conditions<br>
|<br>
|<b>Imput process</b>: Each collection has to provide its own list of
|culture media and recipes, medium provided for strain is linked to
|medium in this file. (<a href='http://www.dsmz.de/media/media.htm'>
|http://www.dsmz.de/media/media.htm</a>)<br>
|Atmospheric and light conditions should only be given if they are
|special.<br>
|Additional remarks on the cultivation like 'freshly prepared medium
|is necessary' or 'extended incubation timme...' if necessary'<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>:Single words<br>
Form_of_supply:
|Form in which the strain will be sent to the custom<br>
|<br>
|<b>Imput process</b>: Values: ‘Active', ‘Dried', 'Dried ice'<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>:Single words<br>
Serovar:
|Serovar name and author.<br>
|Required for some medically important species.<br>
|Does not apply to all strains<br>
|<br>
|<b>Imput process</b>: <i>Format</i>: see
|<a href='/guidelines/catalogue/CPserobact.html'>MINE format</a>
|(Stalpers et al., Systematic Applied Microbiol 1990;13:92-103)<br>
|<b>Required for</b>: Recommended Data SETo (RDS)<br>
|<b>Indexed by</b>:Single words<br>
Isolated_from:
|Name of substrate or host from which the strain was isolated<br>
|<br>
|<b>Imput process</b>: Enter information as given by depositor or as
|retrieved from public information sources<br>
|<br>
|<i>Format</i>: see
|<a href='/guidelines/catalogue/CPisolbact.html'>MINE format</a>
|(Stalpers et al., Systematic Applied Microbiol 1990;13:92-103)<br>
|<b>Required for</b>: Recommended Data SETo (RDS)<br>
|<b>Indexed by</b>:Single words<br>
Geografic_origin:
|Name of country where strain originated from, followed by details
|on location<br>
|<br>
|<b>Imput process</b>: Enter information as given by depositor or as
|retrieved from public information sources<br>
|<br>
|<i>Format</i>: see
|<a href='/guidelines/catalogue/CPgeographicbact.html'>MINE format</a>
|(Stalpers et al., Systematic Applied Microbiol 1990;13:92-103)<br>
|<b>Required for</b>: Recommended Data SETo (RDS)<br>
|<b>Indexed by</b>:Single words<br>
Literature:
|Original publication in which the element is described<br>
|<b>Input process</b>: Free text<br> <u>New entry</u>: Author, Title
|Year';'Volume(iusse)':'beginning page#'-'ending page#<br>
|The title of the journal is abbreviated following international
|standard rules; the abbreviations are without dot
|The title of the article is not mentioned<br>
|<u>Existing entries</u>: Conversion by SRS following
|CABRI agreed standard<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>: Single words<br>
History_of_deposit:
|History of the element from author to depositor, in reverse order<br>
|<b>Input process</b>: Free text. The name of the depositor must be
|entered obligatory; history when known<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>: Single words<br>
}
]