# NCCB Plasmid Catalogue - Information file
# Version 2023.02.17.01
# Last Updated February 17, 2023
# Author: Domenico Marra & Francesca Piersigilli & Paolo Romano
# (c) CABRI 1999-2023
$NCCB_PLASMID_RES=$Resource:[
description:
|<p>
|This is the Phabagen plasmid catalogue.<p>
|It contains descriptions of plasmids available from the Phabagen culture collection.<p>
|This database contains data on about 3,500 mutant strains available from Phabagen.
| They may or may not contain plasmids (natural or constructed).
| These plasmids are not used as cloning vectors, but are interesting
| because of the acquired phenotype of the host/plasmid combination (e.g. F plasmids, Col plasmids).
| The database also describes about 4,500 strains available from other
| collections cooperating in the NCC (Netherlands Culture Collections of Microorganisms)
contact:
|<address>
|Westerdijk Fungal Biodiversity Institute<br>
|P.O. Box 85167<br>
|NL-3508 AD Utrecht<br>
|The Netherlands<br>
|Phone: +31-(0)30-2122600<br>
|Fax : +31-(0)30-2122601
|</address><P>
www:
|Web: <a href="https://wi.knaw.nl/NCCB_plasmid_table">https://wi.knaw.nl/NCCB_plasmid_table</a><br>
|Email: <a href=mailto:sales@cbs.knaw.nl>sales@wi.knaw.nl</a> - |<a href=mailto:NCCB@wi.knaw.nl>NCCB@wi.knaw.nl</a>
email:
|<a href=mailto:sales@cbs.knaw.nl>sales@wi.knaw.nl</a><br>
|<a href=mailto:NCCB@wi.knaw.nl>NCCB@wi.knaw.nl</a>
fields: {
Name:
|Name of the element<br>
|<b>Input process</b>: name given by the depositor or as published<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>: Single words<br>
|<b>Skipped characters</b>: /.-<br>
|<b>Not indexed characters</b>: )(+%$"\&'?!|#@<<br>
Collection_number:
|Number of the element in the own collection under
|which it is distributed<br>
|<b>Input process</b>: Collection acronym followed by a number
|separated by space<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>: Unique element<br>
|<b>Skipped characters</b>: ,;:.)(+*<br>
|<b>Not indexed characters</b>: )(+$"\&'?!|#@<br>
Type:
|Element type<br>
|<b>Input process</b>: Reference list: plasmid, phasmid, cosmid,
|shuttle vector, transposon, minitransposon, IS element<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>: Single words<br>
|<b>Skipped characters</b>: Blank space<br>
|<b>Not indexed characters</b>: )(+$"\'?!=|#@<br>
Class:
|Origin of the element<br>
|<b>Input process</b>: Reference list: non-recombinant, recombinant<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>: Single words<br>
|<b>Skipped characters</b>: Blank space<br>
|<b>Not indexed characters</b>: )(+$"\'?!=|#@<br>
Other_culture_collection_numbers:
|Numbers of the element under which it is distributed by other
|culture<br>
|collections, incl. non-CABRI numbers if possible
|(e.g. ATCC, NCTC, etc.)<br>
|<b>Input process</b>: Automatically generated.
|If the content of this field cannot automatically be generated at
|the main site it will be removed from the MDS for plasmids.<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>: Single words<br>
|<b>Skipped characters</b>: Blank space<br>
|<b>Not indexed characters</b>: )(+$"\'?!=|#@<br>
Host_for_distribution:
|Taxonomic designation and strain designation of the host organism in
|which the element is distributed<br>
|<b>Input process</b>: e.g. Escherichia coli K12 MC1061.
|Reference list: CABRI in house agreed list<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>: Single words<br>
|<b>Skipped characters</b>: Blank space<br>
|<b>Not indexed characters</b>: )(+$"\'?!=|#@<br>
Medium:
|Name or collection number of the medium on which the host organism is
|preferably grown<br>
|<b>Input process</b>: Free text which may be linked to a text file
|describing the recipe for the medium<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>: Single words<br>
|<b>Skipped characters</b>: Blank space<br>
|<b>Not indexed characters</b>: )(+$"\'?!|#@<br>
Restricted_distribution:
|Restrictions for distribution of the element (hazard group, "for
|research purposes only", patent info, import/export regulations,
|etc.)<br>
|<b>Input process</b>: Free text: "No" or the description of the
|appropriate restrictions<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>: Single words<br>
|<b>Skipped characters</b>: Blank space<br>
|<b>Not indexed characters</b>: )(+$"\'?!=|#@<br>
Literature:
|Original publication in which the element is described<br>
|<b>Input process</b>: Free text<br> <u>New entry</u>: Author, Title
|Year';'Volume(iusse)':'beginning page#'-'ending page#<br>
|The title of the journal is abbreviated following international
|standard rules; the abbreviations are without dot
|The title of the article is not mentioned<br>
|<u>Existing entries</u>: Conversion by SRS following
|CABRI agreed standard<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>: Single words<br>
|<b>Skipped characters skipped</b>: Blank space<br>
|<b>Not indexed characters</b>: )(+$"\'?!=|#@<br>
History_of_deposit:
|History of the element from author to depositor, in reverse order<br>
|<b>Input process</b>: Free text. The name of the depositor must be
|entered obligatory; history when known<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>: Single words<br>
|<b>Skipped characters</b>: Blank space<br>
|<b>Not indexed characters</b>: )(+$"\'?!=|#@<br>
Selectable_phenotype:
|Feature encoded by the element enforcing its host strain
|to maintain the
|element in order to survive under
|appropriate cultivation conditions<br>
|<b>Input process</b>: Reference list: CABRI in house agreed list<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>: Single words<br>
|<b>Skipped characters</b>: Blank space<br>
|<b>Not indexed characters</b>: )(+$"\'?!=|#@<br>
Replicon:
|Names of replicon elements<br>
|<b>Input process</b>: Reference list: CABRI in house agreed list<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>: Single words<br>
|<b>Skipped characters</b>: Blank space<br>
|<b>Not indexed characters</b>: )(+$"\'?!=|#@<br>
Host_range:
|Hosts in which the element can be propagated and/or used and, when
|applicable, the peculiar features that are necessary for making use of
|the special characteristics of the element<br>
|<b>Input process</b>: Free text based on the VECAP3 list in
|Vicente et al., World J. Microbiol. and Biotechnol.
|8 (1992), 519-526<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>: Single words<br>
|<b>Skipped characters</b>: Blank space<br>
|<b>Not indexed characters</b>: )(+$"\'?!=|#@<br>
Properties_and_applications:
|Description of the properties of the element, as well as its
|application possibilities<br>
|<b>Input process</b>: Reference list: CABRI in house agreed list
|based on the VECAP4, VECAP5 and VECAP6 lists in Vicente et al.,
|World J. Microbiol. and Biotechnol. 8 (1992), 519-526)<br>
|<b>Required for</b>: Minimum Data SETo (MDS)<br>
|<b>Indexed by</b>: Single words<br>
|<b>Skipped characters</b>: Blank space<br>
|<b>Not indexed characters</b>: )(+$"\'?!=|#@&<br>
}
]