GUIDELINES FOR CATALOGUE PRODUCTION Data input & authenticationfor phages |
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Data Sets
- Minimum Data Set, General Definition
- Minimum data set for phages
- Recommended data set for phages
- Full data set
Data entry and validation
| Element name | History of deposit |
Field |
Element name |
Description |
Contains the name of the element |
Input process |
As given by the depositor |
Required for |
MDS |
Field |
Collection number |
Description |
Contains the number of the element in the collection under which the element is distributed |
Input process |
collection acronym followed by a number |
Required for |
MDS |
Field |
Element type |
Description |
Contains element type. |
Input process |
CABRI agreed list: phage transposon minitransposon IS element |
Required for |
MDS |
Other culture collection numbers
Field |
Other culture collection numbers |
Description |
Numbers of the element under which it is distributed by other culture collections, incl. non-CABRI numbers if possible (e.g. ATCC, NCTC, plasmid collection of Vicente, …) |
Input process |
HGMP will be asked to generate the content of this field automatically, based on the name of the element. Clients must be warned that although the elements have the same name, the physical material may vary. Reference list: not necessary if automated |
Required for |
MDS |
Field |
Restricted distribution |
Description |
Restriction for the delivery and the use of the phage |
Input process |
enter "no", or a text field describing the appropriate restrictions: hazard group, import/export regulations, .. The text may contain codes which refer to text files explaining the restrictions in more detail. |
Required for |
MDS |
Field |
Literature |
Description |
Original publication in which the element is described. |
Input process |
new entry: JournalTitle Year ;Volume(issue):beginning page#'-'ending page#The journal title is abbreviated following international standard rules (ISSN abbreviations). The abbreviations are without dot. The title of the article is not mentioned. existing catalogues: conversion by SRS following CABRI agreed standard |
Required for |
MDS |
Field |
History of deposit |
Description |
Contains the history of the element from author to depositor, in reverse order. The name of the depositor must be entered obligatory; history when known. |
Input process |
Free text |
Required for |
MDS |
Field |
Host for propagation |
Description |
Description of suitable host strains (on family, genus, species level), where possible completed with requirements for infection on phenotypic level (e.g. gram-negative bacteria, or E. coli LamB+) |
Input process |
Free text |
Required for |
MDS |
Field |
Host used for propagation |
Description |
Taxonomic designation and strain designation of the host organism used for propagation of the phage (e.g. E. coli MC1061) |
Input process |
Free text |
Required for |
MDS |
Field |
Lysogenic |
Description |
Logical field: "yes" or "no". Enter "yes" when the infecting bacteriophage genome can become integrated into the bacterial host DNA, and is subsequently replicated and transmitted to progeny bacteria like any other chromosomal gene. |
Input process |
enter "yes" or "no", |
Required for |
MDS |
Field |
Cell surface receptor |
Description |
Name of the cell surface receptor |
Input process |
Free text |
Required for |
RDS |
Field |
Virus used for |
Description |
Possible usage of the virus |
Input process |
Reference list: - PVT format (Vicente et al., World J Microbiol Biotechnol 1992;8:519-526:generalized transduction specialized transduction plasmid specificity phage typing other virus uses |
Required for |
MDS |
Guidelines prepared for
CABRI by BCCM, CBS, CERDIC, DSMZ, ECACC, HGMP, INRC, MSDN |
© The CABRI Consortium 1999-2003. This work cannot be reproduced in whole or in part without the express written permission of the CABRI consortium.
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Site maintained by the CABRI webmaster. Last revised on January 15th, 2002.